STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1876OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: swo:Swol_0240 hypothetical protein; PFAM: OmpA/MotB domain protein; SPTR: Q0B0B2 Putative uncharacterized protein; PFAM: OmpA family. (258 aa)    
Predicted Functional Partners:
Slip_1877
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR000540:IPR002898; KEGG: swo:Swol_0239 hypothetical protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q0B0B3 Putative uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
 0.999
Slip_0951
COGs: COG1558 Flagellar basal body rod protein; InterPro IPR019776:IPR001444:IPR010930:IPR006299; KEGG: cce:Ccel_2053 flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; SPTR: A1HN44 Flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
  
 0.956
Slip_0954
COGs: COG1536 Flagellar motor switch protein; InterPro IPR006668:IPR000090:IPR011002; KEGG: hmo:HM1_2222 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region; SPTR: B0THA3 Flagellar motor switch protein flig; TIGRFAM: flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG.
 
  
 0.954
Slip_0950
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.948
Slip_1910
COGs: COG1256 Flagellar hook-associated protein; InterPro IPR002371:IPR001444:IPR010930; KEGG: swo:Swol_0192 flagellar hook-associated protein-like protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Q0B0G0 Flagellar hook-associated protein-like protein; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.
 
  
 0.944
Slip_0966
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597:IPR001543:IPR001172:IPR012826; KEGG: swo:Swol_0862 CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; SPTR: Q0AYM4 CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliN.
 
  
 0.941
Slip_1882
Flagellar protein FliS; COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: swo:Swol_0232 flagellin-specific chaperone FliS-like protein; PFAM: flagellar protein FliS; SPTR: Q0B0C0 Flagellin-specific chaperone FliS-like protein; TIGRFAM: flagellar protein FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
 
  
 0.927
Slip_0965
COGs: COG1868 Flagellar motor switch protein; InterPro IPR001689:IPR001543; KEGG: swo:Swol_0861 hypothetical protein; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; SPTR: Q0AYM5 Putative uncharacterized protein; TIGRFAM: flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
 
  
 0.925
Slip_0953
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.898
Slip_0962
Fagellar hook-basal body protein; COGs: COG1749 Flagellar hook protein FlgE; InterPro IPR001444:IPR011491:IPR010930:IPR020013; KEGG: swo:Swol_0858 flagellar hook protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein; SPTR: Q0AYM8 Flagellar hook protein; TIGRFAM: fagellar hook-basal body protein; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins.
 
  
 0.894
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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