STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1950Protein of unknown function DUF421; COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: mta:Moth_0220 hypothetical protein; PFAM: protein of unknown function DUF421; SPTR: Q2RLY4 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF421). (226 aa)    
Predicted Functional Partners:
Slip_0528
Stage V sporulation protein AC; InterPro IPR014203:IPR005562; KEGG: drm:Dred_1106 SpoVA protein; PFAM: SpoVA protein; SPTR: A4J3I8 SpoVA protein; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
 
  
 0.754
Slip_0529
InterPro IPR010894; KEGG: swo:Swol_0627 stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; SPTR: Q0AZ98 Stage V sporulation AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
 
  
 0.753
Slip_1062
InterPro IPR004995; KEGG: mta:Moth_2042 GerA spore germination protein; PFAM: GerA spore germination protein; SPTR: Q2RGV1 GerA spore germination protein; PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.751
Slip_0298
InterPro IPR004995; KEGG: swo:Swol_0078 germination protein; PFAM: GerA spore germination protein; SPTR: Q0B0R9 Germination protein; PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.743
Slip_0530
Stage V sporulation protein AE; InterPro IPR014204:IPR005562; KEGG: swo:Swol_0628 SpoVA protein; PFAM: SpoVA protein; SPTR: Q0AZ97 SpoVA protein; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE.
 
  
 0.739
Slip_0295
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.735
Slip_0296
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.734
Slip_0292
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.731
Slip_1064
InterPro IPR008844; KEGG: adg:Adeg_0298 germination protein, Ger(X)C family; PFAM: spore germination B3 GerAC family protein; SPTR: C9RB34 Germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.709
Slip_0291
Spore germination protein; InterPro IPR004761; KEGG: pth:PTH_1839 hypothetical protein; PFAM: Spore germination protein; SPTR: A5D161 Hypothetical membrane protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
   
 0.701
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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