STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23658.1Quinol:cytochrome c oxidoreductase quinone-binding subunit 2; KEGG: chu:CHU_2208 hypothetical protein; SPTR: Putative uncharacterized protein. (438 aa)    
Predicted Functional Partners:
ADR23655.1
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dfe:Dfer_3475 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulfide reductase chain C; PFAM: Polysulphide reductase, NrfD.
 
 
 0.987
ADR23656.1
Quinol:cytochrome c oxidoreductase membrane protein; KEGG: chu:CHU_2210 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3341).
 
 
 0.986
ADR23654.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017909: IPR017896: IPR006311; KEGG: sli:Slin_5665 putative iron-sulfur binding oxidoreductase; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
 
 0.979
ADR23653.1
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; InterPro IPR009056: IPR011031: IPR003088; KEGG: dfe:Dfer_3477 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c3; PFAM: Class III cytochrome C family; Cytochrome c.
 
 
 0.968
tsf
Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
   
 0.934
ADR23657.1
InterPro IPR009056; KEGG: dfe:Dfer_3473 cytochrome c family protein; SPTR: Putative uncharacterized protein; PFAM: Cytochrome c.
 
     0.931
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 0.911
rpsL
SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
  
 0.911
rpsG
SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 0.911
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.911
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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