STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX10782.1Acyl-coa thioesterase 2; Identified by match to protein family HMM PF02551. (234 aa)    
Predicted Functional Partners:
EEX10779.1
Identified by match to protein family HMM PF01636.
 
    0.683
EEX10778.1
Rhamnolipids biosynthesis 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
 
     0.540
EEX10781.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
     0.540
EEX10780.1
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614; match to protein family HMM PF09339.
 
     0.519
EEX10777.1
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
 
   0.483
lcdH
Bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
     
 0.451
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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