STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C4R8R5_KOMPGEssential nucleolar protein, putative DEAD-box RNA helicase; Belongs to the DEAD box helicase family. (758 aa)    
Predicted Functional Partners:
C4R3V5_KOMPG
Nucleolar protein.
   
 
 0.948
C4QVZ6_KOMPG
RNA helicase.
  
 
0.933
C4R1K0_KOMPG
Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis.
   
 
 0.917
C4R5N5_KOMPG
ATP-dependent RNA helicase of the DEAD box family; Belongs to the DEAD box helicase family.
  
0.915
C4R842_KOMPG
Nucleolar protein, forms a complex with Noc4p.
   
 0.912
C4R802_KOMPG
Uncharacterized protein.
  
 
0.900
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.899
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.890
C4R782_KOMPG
Uncharacterized protein.
   
 
 0.887
C4R2V4_KOMPG
Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly.
   
 0.886
Your Current Organism:
Komagataella phaffii
NCBI taxonomy Id: 644223
Other names: K. phaffii GS115, Komagataella phaffii GS115
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