STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2669Protein of unknown function DUF151; COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: dal:Dalk_2411 protein of unknown function DUF151; PFAM: protein of unknown function DUF151; SPTR: B8FB18 Putative uncharacterized protein; PFAM: Uncharacterised ACR, COG1259. (161 aa)    
Predicted Functional Partners:
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.795
Deba_2670
PHP domain protein; COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR003141:IPR016195:IPR004013; KEGG: pca:Pcar_1215 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: Q1NUX2 PHP-like; PFAM: PHP domain.
       0.730
Deba_2671
Protein of unknown function UPF0153; InterPro IPR005358; KEGG: sfu:Sfum_2545 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: A0LLC1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153).
       0.660
Deba_2667
Rhomboid family protein; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: dau:Daud_1165 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: B1I455 Rhomboid family protein; PFAM: Rhomboid family.
       0.552
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
   0.510
Deba_2672
COGs: COG1344 Flagellin and related hook-associated protein; KEGG: gme:Gmet_0439 flagellin-like; SPTR: Q1NR20 Flagellin-like:Flagellin hook IN; PFAM: Bacterial flagellin N-terminal helical region.
       0.401
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.