STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1001Possible glucose 6-phosphate dehydrogenase effector OpcA. (499 aa)    
Predicted Functional Partners:
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.906
cobB
Cobyrinic acid a,c-diamide synthase; Identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00379.
       0.768
sync_1860
Membrane associated GTPase.
  
     0.734
sync_2124
AbrB family transciptional regulator.
  
     0.733
sync_0937
Conserved hypothetical protein.
  
     0.731
sync_0469
Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1.
  
     0.718
sync_1149
Uncharacterized membrane protein.
  
     0.715
sync_2713
Uncharacterized secreted protein.
  
     0.715
sync_1881
Conserved hypothetical protein.
  
     0.700
sync_2257
Uncharacterized conserved membrane protein.
  
     0.698
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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