STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1364D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666. (425 aa)    
Predicted Functional Partners:
sync_1365
Conserved hypothetical protein; Identified by similarity to GB:CAE20894.1.
       0.815
sync_1366
Conserved hypothetical protein.
       0.672
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
     0.653
sync_2141
Identified by match to protein family HMM PF02016.
 
  
 0.648
sync_1702
Uncharacterized protein family protein.
 
  
 0.646
nifS
Possible cysteine desulfurase (class-V aminotransferase family); Identified by match to protein family HMM PF00266.
       0.595
sync_0595
ErfK/YbiS/YcfS/YnhG superfamily protein; Identified by match to protein family HMM PF03734.
     
 0.518
sync_1697
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.518
sync_1728
ATP synthase; Identified by match to protein family HMM PF03734.
     
 0.518
sync_2037
Identified by match to protein family HMM PF03734.
     
 0.518
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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