sync_1748 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1748

ABC transporter component, possibly Mn transport; Identified by match to protein family HMM PF00950. (260 aa)

Predicted Functional Partners:

sync_1749

0.998

ssaB

0.964

sync_1757

0.956

sync_1498

0.900

sync_1758

0.894

sync_1499

0.866

sync_1750

0.773

sync_1745

0.633

sync_1746

0.633

sync_1751

0.619

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ssaB	sync_1498	sync_1747	sync_1498	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.783
ssaB	sync_1499	sync_1747	sync_1499	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	0.752
ssaB	sync_1745	sync_1747	sync_1745	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Possible tRNA synthetases class I.	0.655
ssaB	sync_1746	sync_1747	sync_1746	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Conserved hypothetical protein.	0.655
ssaB	sync_1748	sync_1747	sync_1748	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter component, possibly Mn transport; Identified by match to protein family HMM PF00950.	0.964
ssaB	sync_1749	sync_1747	sync_1749	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter, ATP binding domain, possibly Mn transport; Identified by match to protein family HMM PF00005.	0.971
ssaB	sync_1750	sync_1747	sync_1750	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Conserved hypothetical protein.	0.748
ssaB	sync_1751	sync_1747	sync_1751	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Conserved hypothetical protein.	0.599
ssaB	sync_1757	sync_1747	sync_1757	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Iron chelate ABC transporter (FeCT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.937
ssaB	sync_1758	sync_1747	sync_1758	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Cation ABC transporter, cation-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	0.470
sync_1498	ssaB	sync_1498	sync_1747	Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	0.783
sync_1498	sync_1499	sync_1498	sync_1499	Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	0.995
sync_1498	sync_1748	sync_1498	sync_1748	Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter component, possibly Mn transport; Identified by match to protein family HMM PF00950.	0.900
sync_1498	sync_1758	sync_1498	sync_1758	Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	Cation ABC transporter, cation-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	0.768
sync_1499	ssaB	sync_1499	sync_1747	ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	0.752
sync_1499	sync_1498	sync_1499	sync_1498	ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.995
sync_1499	sync_1748	sync_1499	sync_1748	ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter component, possibly Mn transport; Identified by match to protein family HMM PF00950.	0.866
sync_1499	sync_1749	sync_1499	sync_1749	ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter, ATP binding domain, possibly Mn transport; Identified by match to protein family HMM PF00005.	0.793
sync_1499	sync_1757	sync_1499	sync_1757	ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	Iron chelate ABC transporter (FeCT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.857
sync_1745	ssaB	sync_1745	sync_1747	Possible tRNA synthetases class I.	ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.	0.655