sync_2158 protein (Synechococcus sp. CC9311)

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

sync_2158

Twitching mobility protein PilT; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420. (380 aa)

Predicted Functional Partners:

pilC

0.915

gspO

0.813

sync_0667

0.630

sync_0659

0.584

sync_2159

0.542

sync_2160

0.541

sync_2161

0.541

sync_2162

0.541

sync_2671

0.501

pilB

0.436

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gspO	pilB	sync_1709	sync_0021	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	0.907
gspO	pilC	sync_1709	sync_0019	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	0.904
gspO	sync_0659	sync_1709	sync_0659	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	Possible pilin; Identified by match to protein family HMM TIGR02532.	0.724
gspO	sync_0667	sync_1709	sync_0667	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	Possible pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.860
gspO	sync_2158	sync_1709	sync_2158	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	Twitching mobility protein PilT; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.813
pilB	gspO	sync_0021	sync_1709	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	0.907
pilB	pilC	sync_0021	sync_0019	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	0.998
pilB	sync_0659	sync_0021	sync_0659	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Possible pilin; Identified by match to protein family HMM TIGR02532.	0.539
pilB	sync_0667	sync_0021	sync_0667	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Possible pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.967
pilB	sync_2158	sync_0021	sync_2158	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Twitching mobility protein PilT; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.436
pilB	sync_2671	sync_0021	sync_2671	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.677
pilC	gspO	sync_0019	sync_1709	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	0.904
pilC	pilB	sync_0019	sync_0021	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	0.998
pilC	sync_0659	sync_0019	sync_0659	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Possible pilin; Identified by match to protein family HMM TIGR02532.	0.687
pilC	sync_0667	sync_0019	sync_0667	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Possible pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.	0.973
pilC	sync_2158	sync_0019	sync_2158	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Twitching mobility protein PilT; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.915
pilC	sync_2671	sync_0019	sync_2671	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.577
sync_0659	gspO	sync_0659	sync_1709	Possible pilin; Identified by match to protein family HMM TIGR02532.	Prepilin peptidase; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.	0.724
sync_0659	pilB	sync_0659	sync_0021	Possible pilin; Identified by match to protein family HMM TIGR02532.	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	0.539
sync_0659	pilC	sync_0659	sync_0019	Possible pilin; Identified by match to protein family HMM TIGR02532.	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	0.687