STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2489Uncharacterized conserved protein; Identified by match to protein family HMM PF07498. (377 aa)    
Predicted Functional Partners:
sync_2490
Predicted membrane protein-related protein.
       0.800
sync_2124
AbrB family transciptional regulator.
  
     0.737
sync_2713
Uncharacterized secreted protein.
  
     0.730
sync_0469
Conserved hypothetical protein; Identified by similarity to GB:CAE21879.1.
  
     0.723
sync_1881
Conserved hypothetical protein.
  
     0.714
sync_2491
Identified by match to protein family HMM PF00614.
 
     0.713
ndhO
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.711
sync_0937
Conserved hypothetical protein.
  
     0.707
sync_1860
Membrane associated GTPase.
  
     0.703
sync_0445
Conserved hypothetical protein.
  
     0.695
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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