STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_1388SH3 type 3 domain protein; InterPro IPR013247: IPR003646; KEGG: gct:GC56T3_3258 N-acetylmuramoyl-L-alanine amidase; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: Bacterial SH3 domain. (168 aa)    
Predicted Functional Partners:
Tmar_1387
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1609 Transcriptional regulators; InterPro IPR005829: IPR001761; KEGG: rxy:Rxyl_2600 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: Transcriptional regulator, LacI family; PFAM: family.
       0.403
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.