STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GCE9TIP-1 family-domain-containing protein. (858 aa)    
Predicted Functional Partners:
A0A1Y2GDV9
Centromere/kinetochore Zw10-domain-containing protein.
   
 0.999
A0A1Y2GXQ5
Sec20-domain-containing protein.
    
 0.995
A0A1Y2GSU9
Secretory pathway protein Sec39-domain-containing protein.
    
 0.987
A0A1Y2GPY1
Syntaxin-18_N domain-containing protein.
    
 0.979
A0A1Y2GVX9
Uncharacterized protein.
    
 0.979
A0A1Y2H173
Longin-like domain-containing protein; Belongs to the synaptobrevin family.
    
 0.960
A0A1Y2GFL4
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.825
A0A1Y2H1F7
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 
 0.790
A0A1Y2GVN7
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.789
A0A1Y2GMG6
Soluble NSF attachment protein.
    
 0.783
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.