STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GPW7Biotin synthase-like protein. (409 aa)    
Predicted Functional Partners:
A0A1Y2GHP9
Adenosylmethionine-8-amino-7-oxononanoate transaminase.
 
 
 0.988
A0A1Y2GBI4
Ornithine aminotransferase.
 
 
 
 0.971
A0A1Y2GY03
Pyridoxal phosphate-dependent transferase.
 
 
 0.896
A0A1Y2GK52
Pyridoxal phosphate-dependent transferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.863
A0A1Y2GT33
Uncharacterized protein.
    
 0.833
A0A1Y2GVK3
Pyridoxal-dependent decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.833
A0A1Y2GVC0
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.793
A0A1Y2GP33
Biotin-protein ligase.
  
 
 0.775
A0A1Y2GPG7
Uncharacterized protein.
  
 
 0.775
A0A1Y2GQX3
Biotin-protein ligase.
  
 
 0.775
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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