STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GRH5WD40-repeat-containing domain protein. (647 aa)    
Predicted Functional Partners:
A0A1Y2GIW5
DNA damage-binding protein 1.
    
 0.981
A0A1Y2GKR7
Ubiquitin-protein ligase, cullin 4; Belongs to the cullin family.
    
 0.952
A0A1Y2GW54
Uncharacterized protein.
   
 0.940
A0A1Y2G8W8
RING-box protein 1.
    
 0.937
A0A1Y2G803
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.919
A0A1Y2GVJ9
Mov34/MPN/PAD-1 family protein.
    
 0.910
A0A1Y2GKY7
Uncharacterized protein.
    
 0.898
A0A1Y2GTI9
OB domain-containing protein.
    
 0.898
A0A1Y2GW73
COP9 signalosome.
    
 0.898
A0A1Y2GEH2
PCI domain-domain-containing protein.
    
 0.897
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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