A0A1Y2GXR1 protein (Lobosporangium transversale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2GXR1

Endo/exonuclease/phosphatase domain-containing protein. (274 aa)

Predicted Functional Partners:

A0A1Y2GLG9

0.785

A0A1Y2GRY0

0.681

A0A1Y2H337

0.673

A0A1Y2H0B2

0.662

A0A1Y2GC43

0.659

A0A1Y2G8Z8

0.652

A0A1Y2GGD8

0.637

A0A1Y2H296

0.636

A0A1Y2GTN0

0.633

A0A1Y2GV66

0.632

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G8Z8	A0A1Y2GC43	Uncharacterized protein.	CWC16 protein.	0.777
A0A1Y2G8Z8	A0A1Y2GLG9	Uncharacterized protein.	Pre-mRNA splicing factor component-domain-containing protein.	0.764
A0A1Y2G8Z8	A0A1Y2GRY0	Uncharacterized protein.	Telomere stability and silencing-domain-containing protein.	0.940
A0A1Y2G8Z8	A0A1Y2GTN0	Uncharacterized protein.	Pre-mRNA splicing factor-domain-containing protein.	0.697
A0A1Y2G8Z8	A0A1Y2GV66	Uncharacterized protein.	Cwf21 domain-containing protein.	0.671
A0A1Y2G8Z8	A0A1Y2GXR1	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.652
A0A1Y2G8Z8	A0A1Y2H296	Uncharacterized protein.	Armadillo-type protein.	0.905
A0A1Y2G8Z8	A0A1Y2H337	Uncharacterized protein.	Pre-mRNA splicing Prp18-interacting factor-domain-containing protein.	0.953
A0A1Y2GC43	A0A1Y2G8Z8	CWC16 protein.	Uncharacterized protein.	0.777
A0A1Y2GC43	A0A1Y2GLG9	CWC16 protein.	Pre-mRNA splicing factor component-domain-containing protein.	0.993
A0A1Y2GC43	A0A1Y2GRY0	CWC16 protein.	Telomere stability and silencing-domain-containing protein.	0.784
A0A1Y2GC43	A0A1Y2GTN0	CWC16 protein.	Pre-mRNA splicing factor-domain-containing protein.	0.992
A0A1Y2GC43	A0A1Y2GV66	CWC16 protein.	Cwf21 domain-containing protein.	0.973
A0A1Y2GC43	A0A1Y2GXR1	CWC16 protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.659
A0A1Y2GC43	A0A1Y2H296	CWC16 protein.	Armadillo-type protein.	0.990
A0A1Y2GC43	A0A1Y2H337	CWC16 protein.	Pre-mRNA splicing Prp18-interacting factor-domain-containing protein.	0.951
A0A1Y2GGD8	A0A1Y2GTN0	Smg-4/UPF3 family-domain-containing protein.	Pre-mRNA splicing factor-domain-containing protein.	0.638
A0A1Y2GGD8	A0A1Y2GXR1	Smg-4/UPF3 family-domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.637
A0A1Y2GGD8	A0A1Y2H0B2	Smg-4/UPF3 family-domain-containing protein.	PWI domain-containing protein.	0.997
A0A1Y2GGD8	A0A1Y2H296	Smg-4/UPF3 family-domain-containing protein.	Armadillo-type protein.	0.984