STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB98778.1Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198:IPR013120:IPR013968; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: mxa:MXAN_0865 oxidoreductase, short chain dehydrogenase/reductase family; SPTR: B4MUW3 GK14728; PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (294 aa)    
Predicted Functional Partners:
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.697
SMB98732.1
Glutamate synthase (NADH) large subunit; InterPro IPR002489:IPR002932:IPR000583:IPR006982; COGs: COG0069 Glutamate synthase domain 2; KEGG: pha:PSHAb0127 glutamate synthase, large subunit, GOGAT; SPTR: A0YCV7 Putative glutamate synthase, ferredoxin-dependent; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II; glutamate synthase; PRIAM: Glutamate synthase (ferredoxin).
     
 0.693
SMB98737.1
InterPro IPR000583; COGs: COG0067 Glutamate synthase domain 1; KEGG: cps:CPS_0761 putative glutamate synthase, ferredoxin-dependent; SPTR: A0YCV7 Putative glutamate synthase, ferredoxin-dependent; PFAM: glutamine amidotransferase class-II; PRIAM: Glutamate synthase (ferredoxin).
     
 0.693
SMC00481.1
Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002424:IPR002198; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; KEGG: aca:ACP_0942 clavaldehyde dehydrogenase; SPTR: A3HZA0 Putative oxidoreductase; PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.669
SMB99541.1
Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002424:IPR002198:IPR013968; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; KEGG: xau:Xaut_0982 short-chain dehydrogenase/reductase SDR; SPTR: A3JK09 Oxidoreductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein.
  
 
  0.668
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.659
SMB86814.1
InterPro IPR001753:IPR006176:IPR006108; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; KEGG: aba:Acid345_2469 3-hydroxyacyl-CoA dehydrogenase; SPTR: A4AQA0 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase/carnithine racemase fusion; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein.
  
 0.653
SMC00299.1
Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198:IPR013968; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; KEGG: bsu:BSU18500 3-ketoacyl-(acyl-carrier-protein) reductase; SPTR: A1ZSH9 Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.603
SMB91714.1
[Acyl-carrier-protein] S-malonyltransferase; InterPro IPR014043:IPR004410; COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; KEGG: hap:HAPS_0853 malonyl CoA-acyl carrier protein transacylase (MCT); SPTR: A1ZI66 Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
  
 0.592
SMB83632.1
KEGG: sus:Acid_3773 hypothetical protein; SPTR: A3KJZ2 Putative secreted protein.
   
 
 0.569
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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