STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0760KEGG: amt:Amet_4388 hypothetical protein; SPTR: Putative uncharacterized protein. (221 aa)    
Predicted Functional Partners:
Sgly_0759
KEGG: amt:Amet_4389 transcriptional regulator/antitoxin, MazE; SPTR: Transcriptional regulator/antitoxin, MazE.
       0.807
Sgly_0761
KEGG: amt:Amet_4387 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1018).
       0.781
Sgly_0758
Hypothetical protein.
       0.773
Sgly_0756
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: bld:BLi01974 CwlC; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: CwlC; PFAM: N-acetylmuramoyl-L-alanine amidase.
       0.737
Sgly_0757
KEGG: tcr:509429.190 hypothetical protein.
       0.737
Sgly_0752
KEGG: dae:Dtox_4212 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.707
Sgly_0753
KEGG: dsy:DSY2188 hypothetical protein; SPTR: Putative bacteriocin ABC transporter.
       0.707
Sgly_0754
KEGG: bcu:BCAH820_4401 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.707
Sgly_0755
Hypothetical protein; KEGG: cph:Cpha266_0408 ECF subfamily RNA polymerase sigma-24 factor; SPTR: Predicted protein.
       0.707
Sgly_0751
Transcriptional regulator, XRE family; COGs: COG2842 Uncharacterized ATPase putative transposase; InterPro IPR001387; KEGG: amt:Amet_4393 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
       0.696
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.