STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1815Extracellular solute-binding protein family 5; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: dae:Dtox_0351 nickel ABC transporter, periplasmic nickel-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Putative uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein. (538 aa)    
Predicted Functional Partners:
Sgly_1819
COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: amt:Amet_4721 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component.
 0.994
Sgly_1818
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0387 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 0.993
Sgly_1817
Nickel-transporting ATPase; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439: IPR013563: IPR003593; KEGG: bld:BLi02814 hypothetical protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Dipeptide ABC transporter (ATP-binding protein); manually curated; PFAM: ABC transporter.
 
 
 0.987
Sgly_1816
COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439: IPR003593; KEGG: wsu:WS0988 oligopeptide ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: OLIGOPEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN; PFAM: ABC transporter.
 
 
 0.986
Sgly_2128
Extracellular solute-binding protein family 5; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: apr:Apre_0689 extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Putative uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein.
  
  
 
0.920
Sgly_2559
COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ara:Arad_8910 peptide ABC transporter; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Peptide ABC transporter; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.878
Sgly_0165
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880: IPR019752: IPR019456: IPR011766: IPR 011895; KEGG: dhd:Dhaf_0054 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SPTR: Pyruvate-flavodoxin oxidoreductase; TIGRFAM: Pyruvate-flavo [...]
  
    0.875
Sgly_2131
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: apr:Apre_1768 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.867
Sgly_2132
COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: apr:Apre_1767 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.866
Sgly_2558
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ara:Arad_8911 dipeptide ABC transporter; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Dipeptide ABC transporter; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.861
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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