STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2172COGs: COG5496 thioesterase; InterPro IPR006683; KEGG: dhd:Dhaf_3066 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Putative uncharacterized protein; PFAM: Thioesterase superfamily. (125 aa)    
Predicted Functional Partners:
Sgly_2445
ADP-ribosylation/Crystallin J1; COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: hmo:HM1_2922 ADP-ribosyl glycohydrolase, putative; PFAM: ADP-ribosylation/Crystallin J1; SPTR: Type I restriction-modification system methyltransferase subunit; PFAM: ADP-ribosylglycohydrolase.
 
      0.697
Sgly_2171
Protein of unknown function UPF0029; COGs: COG1739 conserved hypothetical protein; InterPro IPR015796: IPR001498: IPR015269; KEGG: dhd:Dhaf_3065 protein of unknown function UPF0029; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0029, Impact; PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: uncharacterized protein, YigZ family.
       0.572
Sgly_2173
Auxin Efflux Carrier; COGs: COG0679 permease; InterPro IPR004776; KEGG: amt:Amet_3396 auxin efflux carrier; PFAM: Auxin efflux carrier; SPTR: Auxin Efflux Carrier; PFAM: Membrane transport protein.
       0.493
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.