STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0683KEGG: bra:BRADO5461 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Rvan_0682
KEGG: hne:HNE_0560 S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase, class III; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
       0.773
Rvan_0685
KEGG: rpb:RPB_3420 coenzyme PQQ synthesis D.
  
     0.695
pqqB
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
  
     0.609
Rvan_2478
PFAM: IS66 Orf2 family protein; KEGG: xau:Xaut_4819 IS66 Orf2 family protein.
  
     0.607
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
  
     0.596
pqqE
Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
  
     0.531
Rvan_2135
Hypothetical protein; KEGG: bja:blr3511 cytochrome c.
  
     0.512
Rvan_2134
KEGG: mdi:METDI0756 diheme cytochrome c, sulfur oxidising protein SoxA.
  
     0.448
Rvan_0681
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
       0.447
Rvan_3571
PFAM: Sulphur oxidation protein SoxZ; KEGG: aeh:Mlg_1269 hypothetical protein.
 
     0.405
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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