STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2773PFAM: protein of unknown function UCP030771; KEGG: oan:Oant_2305 hypothetical protein. (106 aa)    
Predicted Functional Partners:
Rvan_2776
KEGG: rsq:Rsph17025_2822 lambda family phage portal protein; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda.
 
    0.965
Rvan_2775
PFAM: peptidase U35 phage prohead HK97; KEGG: rsq:Rsph17025_2821 peptidase U35, phage prohead HK97.
 
    0.962
Rvan_2780
PFAM: terminase GpA; KEGG: oan:Oant_2309 phage terminase GpA.
 
    0.849
Rvan_2774
KEGG: azl:AZL_019010 hypothetical protein.
       0.800
Rvan_2770
KEGG: ote:Oter_1207 hypothetical protein.
       0.773
Rvan_2771
KEGG: nwi:Nwi_0274 hypothetical protein.
       0.773
Rvan_2772
KEGG: sit:TM1040_1114 hypothetical protein.
       0.773
Rvan_2777
KEGG: bja:blr1345 hypothetical protein.
       0.773
Rvan_2769
PFAM: integrase family protein; KEGG: avi:Avi_6147 integrase; Belongs to the 'phage' integrase family.
 
     0.767
Rvan_2778
Hypothetical protein; KEGG: dme:Dmel_CG2269 CG2269 gene product from transcript CG2269-RC.
       0.460
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.