STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3253PFAM: Carbohydrate-selective porin OprB; KEGG: mno:Mnod_4737 carbohydrate-selective porin OprB. (478 aa)    
Predicted Functional Partners:
Rvan_3016
Hopanoid-associated phosphorylase; KEGG: cti:RALTA_B1984 hypothetical protein; TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1.
  
     0.665
Rvan_2491
TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: bbt:BBta_2973 putative protein export membrane protein.
  
     0.580
Rvan_2402
PFAM: Carbohydrate-selective porin OprB; KEGG: nha:Nham_2969 carbohydrate-selective porin OprB.
  
  
 
0.550
Rvan_2753
KEGG: mpo:Mpop_0238 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.443
Rvan_2754
PFAM: protein of unknown function DUF1656; KEGG: cti:RALTA_B1729 conserved hypothetical protein; associated to putative secretion protein and putative transporter.
  
     0.412
Rvan_2755
PFAM: Fusaric acid resistance protein conserved region; KEGG: mrd:Mrad2831_2406 fusaric acid resistance protein region.
  
     0.400
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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