Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Lbys_0110 | Lbys_0114 | Short-chain dehydrogenase/reductase SDR; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347; KEGG: acd:AOLE_00935 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | DNA-N1-methyladenine dioxygenase; COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: phe:Phep_1031 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily. | 0.437 |
Lbys_0113 | Lbys_0114 | DNA-O6-methylguanine--protein-cysteine S-methyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR001497:IPR014048:IPR000005:IPR018060; KEGG: fjo:Fjoh_1575 methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguani [...] | DNA-N1-methyladenine dioxygenase; COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: phe:Phep_1031 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily. | 0.745 |
Lbys_0114 | Lbys_0110 | DNA-N1-methyladenine dioxygenase; COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: phe:Phep_1031 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily. | Short-chain dehydrogenase/reductase SDR; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347; KEGG: acd:AOLE_00935 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.437 |
Lbys_0114 | Lbys_0113 | DNA-N1-methyladenine dioxygenase; COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: phe:Phep_1031 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily. | DNA-O6-methylguanine--protein-cysteine S-methyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR001497:IPR014048:IPR000005:IPR018060; KEGG: fjo:Fjoh_1575 methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguani [...] | 0.745 |
Lbys_0114 | Lbys_1995 | DNA-N1-methyladenine dioxygenase; COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: phe:Phep_1031 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily. | Ketopantoate reductase ApbA/PanE domain protein; COGs: COG1893 Ketopantoate reductase; InterPro IPR013332:IPR013752; KEGG: sli:Slin_2608 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; SPTR: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase. | 0.761 |
Lbys_1995 | Lbys_0114 | Ketopantoate reductase ApbA/PanE domain protein; COGs: COG1893 Ketopantoate reductase; InterPro IPR013332:IPR013752; KEGG: sli:Slin_2608 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; SPTR: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase. | DNA-N1-methyladenine dioxygenase; COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: phe:Phep_1031 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily. | 0.761 |