STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Lbys_1918Regulatory protein DeoR; COGs: COG2378 transcriptional regulator protein; InterPro IPR001034; KEGG: fjo:Fjoh_0788 helix-turn-helix, type 11 domain-containing protein; SMART: regulatory protein DeoR; SPTR: Helix-turn-helix, type 11 domain protein; PFAM: HTH domain. (315 aa)    
Predicted Functional Partners:
Lbys_1913
Biotin/lipoyl attachment domain-containing protein; COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: gfo:GFO_0974 biotin carboxyl carrier protein of acyl-CoA carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Biotin carboxyl carrier protein of acyl-CoA carboxylase; PFAM: Biotin-requiring enzyme.
       0.773
Lbys_1914
Hypothetical protein; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; KEGG: mkm:Mkms_3184 methylmalonyl-CoA mutase, beta subunit; SPTR: Methylmalonyl-CoA mutase, small subunit; PFAM: Methylmalonyl-CoA mutase.
       0.773
Lbys_1915
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.773
Lbys_1916
COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR006159:IPR006099:IPR006158; KEGG: sli:Slin_6640 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain.
       0.773
Lbys_1917
COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: phe:Phep_0639 carboxyl transferase; PFAM: carboxyl transferase; SPTR: Propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase domain.
       0.773
Lbys_1919
DinB family protein; InterPro IPR007837; KEGG: fjo:Fjoh_0790 DinB family protein; PFAM: DinB family protein; SPTR: Putative uncharacterized protein; PFAM: DinB family.
 
     0.743
Lbys_1911
Guanine-specific ribonuclease N1 and T1; COGs: COG4290 Guanyl-specific ribonuclease Sa; InterPro IPR000026; KEGG: tpr:Tpau_0946 guanine-specific ribonuclease N1 and T1; PFAM: guanine-specific ribonuclease N1 and T1; SPTR: Probable guanyl-specific ribonuclease; PFAM: ribonuclease.
       0.610
Lbys_1912
Barstar (barnase inhibitor); InterPro IPR000468; KEGG: dfe:Dfer_3697 barstar (barnase inhibitor); PFAM: Barstar (barnase inhibitor); SPTR: Barstar (Barnase inhibitor); PFAM: Barstar (barnase inhibitor).
       0.610
Lbys_3046
Transcription activator effector binding protein; COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: coc:Coch_1918 transcription activator effector binding; PFAM: transcription activator effector binding; SPTR: Transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding domain.
     0.592
Lbys_1910
UspA domain-containing protein; InterPro IPR006015:IPR006016; KEGG: dfe:Dfer_4990 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein; PFAM: Universal stress protein family.
       0.522
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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