STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2177KEGG: dfe:Dfer_4247 hypothetical protein; SPTR: Putative uncharacterized protein. (393 aa)    
Predicted Functional Partners:
Lbys_0610
KEGG: dfe:Dfer_4465 gliding motility-related protein; SPTR: Gliding motility-related protein.
  
 
 0.970
Lbys_2176
KEGG: sli:Slin_5949 hypothetical protein; SPTR: Fjo24; PFAM: Peptidase family C25.
 
   
 0.904
Lbys_3172
InterPro IPR005632; KEGG: sli:Slin_4435 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); manually curated; PFAM: Outer membrane protein (OmpH-like).
  
    0.777
Lbys_0069
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: sli:Slin_3042 response regulator receiver protein; PFAM: response regulator receiver; PglZ domain protein; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: PglZ domain; Response regulator receiver domain.
  
   
 0.774
Lbys_3396
KEGG: dfe:Dfer_5211 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.773
Lbys_2789
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR004358:IPR005467; KEGG: sli:Slin_3618 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.767
Lbys_1110
InterPro IPR001440:IPR019734:IPR013026; KEGG: sli:Slin_3219 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein; manually curated.
  
   
 0.764
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
  
 0.764
Lbys_3032
KEGG: sli:Slin_4282 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.764
Lbys_2038
KEGG: sli:Slin_4754 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.725
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (18%) [HD]