STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2282Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_3196 surface antigen (D15); PFAM: surface antigen (D15); SPTR: Surface antigen (D15); PFAM: Surface antigen. (766 aa)    
Predicted Functional Partners:
Lbys_2283
InterPro IPR007452; KEGG: dfe:Dfer_3195 protein of unknown function DUF490; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490).
 
   
 0.965
Lbys_0698
Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: dfe:Dfer_5214 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO.
 
 
 0.858
Lbys_2046
Peptidase M50; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478:IPR008915; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SPTR: Membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP.
 
  
 0.692
Lbys_2284
KEGG: sli:Slin_4983 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.653
Lbys_3421
Metallophosphoesterase; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391:IPR004843:IPR002372; KEGG: cpi:Cpin_6658 metallophosphoesterase; PFAM: metallophosphoesterase; Pyrrolo-quinoline quinone repeat-containing protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase; PQQ enzyme repeat.
  
 
 0.551
Lbys_2260
KEGG: bfs:BF0780 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.547
Lbys_2619
PKD domain containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR000601:IPR018391:IPR002372; KEGG: mac:MA4589 cell surface protein; PFAM: PKD domain containing protein; Pyrrolo-quinoline quinone repeat-containing protein; SMART: PKD domain containing protein; Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Cell surface protein; PFAM: PQQ enzyme repeat; PKD domain.
  
 
 0.547
Lbys_0699
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
   0.529
Lbys_3173
Outer membrane chaperone Skp (OmpH); COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: sli:Slin_4436 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like).
 
  
 0.518
Lbys_1770
KEGG: dfe:Dfer_4253 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.513
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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