STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2428YD repeat protein; InterPro IPR006530; KEGG: phe:Phep_1049 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: YD repeat protein; TIGRFAM: YD repeat protein. (2232 aa)    
Predicted Functional Partners:
Lbys_2429
Hypothetical protein; KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain.
 
     0.948
Lbys_2431
Hypothetical protein; KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Putative cell wall-associated protein; TIGRFAM: RHS repeat-associated core domain.
 
     0.946
Lbys_2427
Kelch repeat type 1-containing protein; InterPro IPR006652; KEGG: cme:CMP002C similar to hedgehog protein; PFAM: Kelch repeat type 1-containing protein; SPTR: Ig-like, group 2; PFAM: Kelch motif.
 
    0.809
Lbys_3287
Hypothetical protein; KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain.
 
     0.780
Lbys_3290
KEGG: bth:BT_2927 putative cell wall-associated protein precursor; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
 
     0.779
Lbys_2435
Hypothetical protein; KEGG: phe:Phep_1050 YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain.
 
     0.777
Lbys_3292
Hypothetical protein; KEGG: bth:BT_2927 putative cell wall-associated protein precursor; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain.
  
     0.774
Lbys_2430
KEGG: bth:BT_0513 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_2432
KEGG: tgu:100232674 hypothetical protein LOC100232674; SPTR: Putative uncharacterized protein.
       0.773
Lbys_2433
Hypothetical protein; KEGG: bth:BT_2927 putative cell wall-associated protein precursor; SPTR: YD repeat protein; TIGRFAM: RHS repeat-associated core domain.
 
     0.764
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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