STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3197COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: sli:Slin_4463 starch synthase; PFAM: Starch synthase catalytic domain-containing protein; SPTR: Starch synthase; PFAM: Starch synthase catalytic domain. (269 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
 0.998
Lbys_0668
NUDIX hydrolase; InterPro IPR000086; KEGG: dfe:Dfer_1953 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain.
   
 
  0.905
Lbys_0489
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2738 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1.
     
 0.902
Lbys_2865
Glycogen(starch) synthase; InterPro IPR008631:IPR022272; KEGG: dfe:Dfer_3735 glycogen (starch) synthase; PFAM: glycogen synthase; PRIAM: Glycogen(starch) synthase; SPTR: Glycogen (Starch) synthase; PFAM: Glycogen synthase.
     
 0.902
Lbys_3196
KEGG: bfs:BF3188 putative lipoprotein; SPTR: Putative uncharacterized protein.
  
    0.807
Lbys_1151
COGs: COG3828 conserved hypothetical protein; InterPro IPR001202; KEGG: dfe:Dfer_2188 cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Trehalose utilisation.
   
    0.637
Lbys_1152
Cytochrome c class I; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterProIPR000601:IPR003088:IPR002324:IPR009056:IPR 001202; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: cytochrome c class I; PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Cytochrome c class I; PFAM: Cytochrome c; Trehalose utilisation.
   
    0.637
Lbys_1730
COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; KEGG: sli:Slin_0399 trehalose synthase-fused maltokinase-like protein; SPTR: Trehalose synthase-fused maltokinase-like protein; TIGRFAM: trehalose synthase-fused probable maltokinase.
  
  
 0.565
glmS
Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.556
pgi
COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672:IPR018189; KEGG: dfe:Dfer_1231 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase; Belongs to the GPI family.
  
  
 0.497
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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