STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3508YceI family protein; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: dfe:Dfer_1196 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain; Belongs to the UPF0312 family. (165 aa)    
Predicted Functional Partners:
pdxJ
Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.664
Lbys_3507
Glycosyl transferase family 2; InterPro IPR001173; KEGG: cpi:Cpin_6508 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
       0.572
Lbys_3505
COGs: COG2367 Beta-lactamase class A; InterPro IPR000871:IPR001466; KEGG: cpi:Cpin_1435 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase.
       0.512
Lbys_3506
Cation diffusion facilitator family transporter; COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: cat:CA2559_09106 cobalt-zinc-cadmium resistance protein CzcD; PFAM: cation efflux protein; SPTR: Cobalt-zinc-cadmium resistance protein czcD; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.512
Lbys_3511
InterPro IPR003825; KEGG: dfe:Dfer_4730 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein.
       0.495
Lbys_3510
COGs: COG1610 conserved hypothetical protein; InterPro IPR019004; KEGG: sli:Slin_4989 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Yqey-like protein.
       0.483
Lbys_3512
KEGG: gfo:GFO_3192 phosphate-selective porin O and P; SPTR: Phosphate-selective porin O and P; PFAM: Phosphate-selective porin O and P.
       0.483
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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