STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0121COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR004632:IPR005814:IPR015424:IPR015421; KEGG: chl:Chy400_3624 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: C1XG95 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (453 aa)    
Predicted Functional Partners:
Trad_0120
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR016161:IPR016162:IPR016160; KEGG: sth:STH722 succinate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Q67RI6 Succinate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.983
Trad_0137
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR016161:IPR016162:IPR016160; KEGG: rmr:Rmar_2008 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: D0MKH7 Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family.
 
 0.930
Trad_0840
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR011408:IPR016160:IPR015590:IPR016162:IPR 016161; KEGG: gau:GAU_2061 putative aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: C1A9C6 Putative aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
 
 0.930
Trad_1227
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR016160:IPR015590:IPR010061:IPR016162:IPR 016161; KEGG: dfe:Dfer_5699 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: B4VJJ9 Methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase.
 
 0.930
Trad_1960
COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR015421:IPR005814; KEGG: sus:Acid_7662 aminotransferase; PFAM: aminotransferase class-III; SPTR: Q01P59 Aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.917
Trad_2740
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR001753:IPR006176:IPR006108:IPR016040:IPR 013328:IPR018376:IPR008927; KEGG: rxy:Rxyl_2453 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: Q1AT98 Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Belongs to the enoy [...]
   
 0.915
Trad_1097
COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR004632:IPR015421:IPR015424:IPR005814; KEGG: tmz:Tmz1t_0429 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; SPTR: C1XPP3 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.906
Trad_1917
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.820
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.816
Trad_0253
COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR020845; KEGG: tth:TTC0886 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q72J93 Acetyl-coenzyme A synthetase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase.
   
 
 0.816
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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