STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0694COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein; SPTR: Q0G1P1 ABC ribose transporter, periplasmic solute-binding protein; PFAM: family. (322 aa)    
Predicted Functional Partners:
Trad_0695
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: pde:Pden_4770 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B9R3J9 Putative amino acid or sugar ABC transport system, permease protein; PFAM: Branched-chain amino acid transport system / permease component.
 
 0.988
Trad_0696
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: rsp:RSP_1247 ABC sugar transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q0G1P3 ABC sugar transporter, ATPase subunit; PFAM: ABC transporter.
 
 0.962
Trad_2294
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: rhi:NGR_c33700 putative sugar ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C3MB91 Putative sugar ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component.
 
 0.932
Trad_0992
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: ecf:ECH74115_5599 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: B5Z1F2 Periplasmic binding protein/LacI transcriptional regulator; PFAM: family.
  
  
 
0.918
Trad_2296
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: smd:Smed_3227 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: A6UEH1 Periplasmic binding protein/LacI transcriptional regulator; PFAM: family.
  
  
 
0.915
Trad_2295
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: mlo:mlr3336 ATP-binding protein, sugar ABC transporter (ribose); PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q98GG8 ATP-binding protein, sugar ABC transporter (Ribose); PFAM: ABC transporter.
 
 0.894
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.880
Trad_0994
Inner-membrane translocator; COGs: COG4158 ABC-type sugar transport system permease component; InterPro IPR001851; KEGG: ent:Ent638_0288 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A4W5J7 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.879
Trad_0693
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR011418:IPR013022; KEGG: dge:Dgeo_2826 xylose isomerase-like TIM barrel; PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; SPTR: Q1J2M9 Xylose isomerase-like protein TIM barrel; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel.
 
    0.775
Trad_0692
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: rxy:Rxyl_0392 oxidoreductase-like protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Q1AZ11 Oxidoreductase-like protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
 
    0.727
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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