STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1022KEGG: sus:Acid_0494 hypothetical protein; SPTR: Q02BR2 Putative uncharacterized protein. (393 aa)    
Predicted Functional Partners:
Trad_1026
Molybdopterin oxidoreductase, iron-sulfur binding subunit; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311:IPR017896:IPR009010; KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Q3JBQ7 Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
 
 0.999
Trad_1025
COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: cag:Cagg_3385 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: B8G8V4 Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD.
 
 
 0.983
Trad_1024
KEGG: rrs:RoseRS_4142 hypothetical protein; SPTR: A5V0T3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3341).
 
 
 0.975
Trad_1027
Conserved hypothetical protein; InterPro IPR000095:IPR011031; KEGG: rrs:RoseRS_4139 hypothetical protein; SPTR: A5V0T0 Putative uncharacterized protein; PFAM: Class III cytochrome C family.
 
 
 0.961
Trad_1023
Conserved hypothetical protein; InterPro IPR009056; KEGG: aba:Acid345_3000 hypothetical protein; SPTR: B9XE55 Putative uncharacterized protein; PFAM: Cytochrome c.
 
    0.950
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
 0.946
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 0.925
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.925
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
 0.925
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
 0.925
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.