Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Trad_1584 | Trad_1585 | Trad_1584 | Trad_1585 | KEGG: xce:Xcel_0488 FHA domain containing protein; SPTR: Q08Y94 Putative prolin-rich exported protein. | KEGG: dge:Dgeo_0508 hypothetical protein; SPTR: Q1J124 Putative uncharacterized protein. | 0.773 |
| Trad_1584 | smpB | Trad_1584 | Trad_1586 | KEGG: xce:Xcel_0488 FHA domain containing protein; SPTR: Q08Y94 Putative prolin-rich exported protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.697 |
| Trad_1585 | Trad_1584 | Trad_1585 | Trad_1584 | KEGG: dge:Dgeo_0508 hypothetical protein; SPTR: Q1J124 Putative uncharacterized protein. | KEGG: xce:Xcel_0488 FHA domain containing protein; SPTR: Q08Y94 Putative prolin-rich exported protein. | 0.773 |
| Trad_1585 | smpB | Trad_1585 | Trad_1586 | KEGG: dge:Dgeo_0508 hypothetical protein; SPTR: Q1J124 Putative uncharacterized protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.697 |
| smpB | Trad_1584 | Trad_1586 | Trad_1584 | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | KEGG: xce:Xcel_0488 FHA domain containing protein; SPTR: Q08Y94 Putative prolin-rich exported protein. | 0.697 |
| smpB | Trad_1585 | Trad_1586 | Trad_1585 | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | KEGG: dge:Dgeo_0508 hypothetical protein; SPTR: Q1J124 Putative uncharacterized protein. | 0.697 |