STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1995COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: fal:FRAAL5825 hypothetical protein; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; SPTR: Q0RDL1 Putative uncharacterized protein; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region. (306 aa)    
Predicted Functional Partners:
Trad_1997
Protein of unknown function DUF403; COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: dra:DR_2041 hypothetical protein; PFAM: protein of unknown function DUF403; SPTR: Q9RST2 Putative uncharacterized protein; PFAM: Bacterial domain of unknown function (DUF403).
  
 0.960
Trad_1998
Protein of unknown function DUF404; COGs: COG2308 conserved hypothetical protein; InterPro IPR016450:IPR007297:IPR007302; KEGG: ddr:Deide_1p01830 hypothetical protein; PFAM: protein of unknown function DUF404; protein of unknown function DUF407; SPTR: C1D2K4 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF404); Domain of unknown function (DUF407).
 
  
 0.944
Trad_1996
COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dra:DR_0843 hypothetical protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; SPTR: Q9RW26 Putative uncharacterized protein; PFAM: Transglutaminase-like superfamily.
 
    
0.836
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.