STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2243Lycopene cyclase domain protein; COGs: COG2324 membrane protein; InterPro IPR002123:IPR007354:IPR017825:IPR005829; KEGG: ddr:Deide_2p01210 hypothetical protein; putative membrane protein; PFAM: protein of unknown function DUF422; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: C1D2Z9 Putative uncharacterized protein; TIGRFAM: lycopene cyclase domain protein; PFAM: Acyltransferase; Protein of unknown function (DUF422); TIGRFAM: lycopene cyclase domain. (713 aa)    
Predicted Functional Partners:
Trad_2241
COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076:IPR014105; KEGG: ddr:Deide_2p01180 putative FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1XLI5 Phytoene dehydrogenase-like oxidoreductase; TIGRFAM: phytoene desaturase; PFAM: FAD dependent oxidoreductase; TIGRFAM: phytoene desaturase.
   
 0.965
Trad_2242
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dra:DR_0089 hypothetical protein; PFAM: glycosyl transferase family 2; SPTR: C1XLI6 Glycosyl transferase; PFAM: Glycosyl transferase family 2.
 
  
 0.889
Trad_2244
FAD dependent oxidoreductase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: sru:SRU_1502 beta-carotene ketolase; PFAM: FAD dependent oxidoreductase; SPTR: Q2S2F6 Beta-carotene ketolase; PFAM: FAD dependent oxidoreductase.
 
   
 0.830
Trad_2248
COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR008949:IPR002060:IPR019845; KEGG: dge:Dgeo_0523 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Q1J109 Phytoene synthase, CrtB; PFAM: Squalene/phytoene synthase.
 
  
 0.776
Trad_2193
COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR014105:IPR008150; KEGG: hau:Haur_3185 zeta-phytoene desaturase; PFAM: amine oxidase; SPTR: A9B6V4 Zeta-phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
   
 0.766
Trad_0171
Rhodopsin; COGs: COG5524 Bacteriorhodopsin; InterPro IPR001425:IPR018229; KEGG: cyc:PCC7424_3927 rhodopsin; PFAM: rhodopsin; SPTR: B7KKH0 Rhodopsin; PFAM: Bacteriorhodopsin-like protein.
  
     0.685
Trad_2908
Rhodopsin; COGs: COG5524 Bacteriorhodopsin; InterPro IPR001425; KEGG: cyn:Cyan7425_3441 rhodopsin; PFAM: rhodopsin; SPTR: B8HQU4 Rhodopsin; PFAM: Bacteriorhodopsin-like protein.
  
     0.585
Trad_0676
Amine oxidase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: dra:DR_2015 oxidoreductase, FAD-binding; PFAM: amine oxidase; SPTR: Q9RSV7 Oxidoreductase, FAD-binding; PFAM: Flavin containing amine oxidoreductase.
 
   
 0.523
Trad_0920
COGs: COG0167 Dihydroorotate dehydrogenase; InterProIPR005720:IPR017896:IPR013785:IPR017900:IPR 012135:IPR001450; KEGG: sus:Acid_7660 dihydropyrimidine dehydrogenase; PFAM: dihydroorotate oxidase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Dihydropyrimidine dehydrogenase (NADP(+)); SPTR: C1XQJ5 Dihydroorotate oxidase B, catalytic subunit; dihydropyrimidine dehydrogenase (NADP+); dihydrouracil dehydrogenase (NAD+); TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein.
  
    0.481
Trad_1338
Protein of unknown function DUF205; COGs: COG5322 dehydrogenase; InterPro IPR003811:IPR006151:IPR016040; KEGG: dge:Dgeo_1012 hypothetical protein; PFAM: protein of unknown function DUF205; Shikimate/quinate 5-dehydrogenase; SPTR: Q1IZM2 Membrane domain and Glutamyl-tRNAGlu reductase-like NAD(P) binding domain; PFAM: Domain of unknown function (DUF205); Shikimate / quinate 5-dehydrogenase; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023; Belongs to the PlsY family.
 
  
 0.470
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.