Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dtxR | fagD | Cul210931_1284 | Cul210931_0046 | Diphtheria toxin repressor. | Iron-siderophore binding protein. | 0.489 |
dtxR | pepD | Cul210931_1284 | Cul210931_0707 | Diphtheria toxin repressor. | Serine protease. | 0.480 |
dtxR | pld | Cul210931_1284 | Cul210931_0042 | Diphtheria toxin repressor. | Phospholipase D; Virulence factor affecting bacterial dissemination and survival within the host. Has magnesium-dependent catalytic activity toward sphingomyelin (SM) and acyl- and alkyl-lysophosphatidylcholine (LPC), but not toward sphingosylphosphorylcholine (SPC) and phosphatidylcholine (PC). Lysophosphatidic acid (LPA), assumed to result from LPC hydrolysis, evokes pathophysiological responses after LPA receptor internalization. Shows hemolytic activity. | 0.648 |
dtxR | rpoB | Cul210931_1284 | Cul210931_0372 | Diphtheria toxin repressor. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.699 |
dtxR | spaF | Cul210931_1284 | Cul210931_2021 | Diphtheria toxin repressor. | Surface-anchored protein, fimbrial subunit. | 0.613 |
dtxR | tox | Cul210931_1284 | Cul210931_0181 | Diphtheria toxin repressor. | Diphtheria toxin. | 0.689 |
fagD | dtxR | Cul210931_0046 | Cul210931_1284 | Iron-siderophore binding protein. | Diphtheria toxin repressor. | 0.489 |
fagD | pld | Cul210931_0046 | Cul210931_0042 | Iron-siderophore binding protein. | Phospholipase D; Virulence factor affecting bacterial dissemination and survival within the host. Has magnesium-dependent catalytic activity toward sphingomyelin (SM) and acyl- and alkyl-lysophosphatidylcholine (LPC), but not toward sphingosylphosphorylcholine (SPC) and phosphatidylcholine (PC). Lysophosphatidic acid (LPA), assumed to result from LPC hydrolysis, evokes pathophysiological responses after LPA receptor internalization. Shows hemolytic activity. | 0.661 |
glxR | nanH | Cul210931_0253 | Cul210931_0440 | CRP/FNR family transcriptional regulator. | Sialidase. | 0.613 |
glxR | pld | Cul210931_0253 | Cul210931_0042 | CRP/FNR family transcriptional regulator. | Phospholipase D; Virulence factor affecting bacterial dissemination and survival within the host. Has magnesium-dependent catalytic activity toward sphingomyelin (SM) and acyl- and alkyl-lysophosphatidylcholine (LPC), but not toward sphingosylphosphorylcholine (SPC) and phosphatidylcholine (PC). Lysophosphatidic acid (LPA), assumed to result from LPC hydrolysis, evokes pathophysiological responses after LPA receptor internalization. Shows hemolytic activity. | 0.589 |
glxR | rpoB | Cul210931_0253 | Cul210931_0372 | CRP/FNR family transcriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.881 |
glxR | sodC | Cul210931_0253 | Cul210931_0655 | CRP/FNR family transcriptional regulator. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.613 |
nanH | glxR | Cul210931_0440 | Cul210931_0253 | Sialidase. | CRP/FNR family transcriptional regulator. | 0.613 |
nanH | pepD | Cul210931_0440 | Cul210931_0707 | Sialidase. | Serine protease. | 0.659 |
nanH | pld | Cul210931_0440 | Cul210931_0042 | Sialidase. | Phospholipase D; Virulence factor affecting bacterial dissemination and survival within the host. Has magnesium-dependent catalytic activity toward sphingomyelin (SM) and acyl- and alkyl-lysophosphatidylcholine (LPC), but not toward sphingosylphosphorylcholine (SPC) and phosphatidylcholine (PC). Lysophosphatidic acid (LPA), assumed to result from LPC hydrolysis, evokes pathophysiological responses after LPA receptor internalization. Shows hemolytic activity. | 0.661 |
nanH | sodC | Cul210931_0440 | Cul210931_0655 | Sialidase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.686 |
nanH | spaF | Cul210931_0440 | Cul210931_2021 | Sialidase. | Surface-anchored protein, fimbrial subunit. | 0.613 |
nanH | tox | Cul210931_0440 | Cul210931_0181 | Sialidase. | Diphtheria toxin. | 0.613 |
pepD | dtxR | Cul210931_0707 | Cul210931_1284 | Serine protease. | Diphtheria toxin repressor. | 0.480 |
pepD | nanH | Cul210931_0707 | Cul210931_0440 | Serine protease. | Sialidase. | 0.659 |
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