STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ42582.1Microcompartments protein; PFAM: BMC domain; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: cyt:cce_2434 carbon dioxide concentrating mechanism protein; PFAM: microcompartments protein; SPTR: Microcompartments protein. (102 aa)    
Predicted Functional Partners:
AFZ45644.1
PFAM: Ethanolamine utilisation protein EutN/carboxysome; COGs: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: mar:MAE_47920 carbon dioxide concentrating mechanism protein; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: Genome sequencing data, contig C303.
 
 
 
 0.949
AFZ42581.1
Microcompartments protein; PFAM: BMC domain; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: naz:Aazo_3759 microcompartments protein; PFAM: microcompartments protein; SPTR: Microcompartments protein.
 
   
0.665
AFZ44613.1
Microcompartments protein; PFAM: BMC domain; InterPro IPR000249; KEGG: cyt:cce_3523 hypothetical protein; PFAM: microcompartments protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.571
AFZ42583.1
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: npu:Npun_F3731 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein.
       0.487
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.434
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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