STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ45511.1PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: cyt:cce_2467 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; PRIAM: N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase. (624 aa)    
Predicted Functional Partners:
AFZ45342.1
Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase; Bacterial SH3 domain; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR006118:IPR013247:IPR002508:IPR003646; KEGG: cyc:PCC7424_3265 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SH3 type 3 domain protein; SMART: cell wall hydrolase/autolysin; SH3 domain protein; SPTR: Cell wall hydrolase/autolysin.
  
  
 
0.926
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
   
 0.764
AFZ42934.1
PFAM: LD-carboxypeptidase; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: cyc:PCC7424_2668 peptidase U61 LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A.
     
 0.515
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.498
AFZ44418.1
PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; FHA domain; TIGRFAM: penicillin-binding protein, 1A family; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR000253:IPR001264:IPR001460:IPR011816; KEGG: cyc:PCC7424_3011 FHA modulated glycosyl transferase/transpeptidase; PFAM: glycosyl transferase family 51; Forkhead-associated protein; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SMART: Forkhead-associated protein; SPTR: FHA modulated glycosyl transferase/transpeptidase; TIGRFAM: penicillin [...]
  
 
 
 0.428
AFZ45510.1
Sodium/proton antiporter NhaS3, CPA2 family; PFAM: Sodium/hydrogen exchanger family; COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: cyh:Cyan8802_0608 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; SPTR: NapA type Na+/H+ antiporter; TC 2.A.37.2.4.
       0.419
AFZ45569.1
PFAM: WD domain, G-beta repeat; FHA domain; COGs: COG2319 FOG: WD40 repeat; InterProIPR000253:IPR019782:IPR017986:IPR019781:IPR 020472:IPR019775:IPR001680; KEGG: cyt:cce_2058 hypothetical protein; PFAM: Forkhead-associated protein; WD40 repeat, subgroup; SMART: Forkhead-associated protein; WD-40 repeat-containing protein; SPTR: Putative uncharacterized protein.
  
 
 0.412
queA
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
    0.404
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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