STRINGSTRING
OBART04G06800.2 protein (Oryza barthii) - STRING interaction network
"OBART04G06800.2" - annotation not available in Oryza barthii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBART04G06800.2annotation not available (310 aa)    
Predicted Functional Partners:
OBART03G33610.1
annotation not available (273 aa)
     
   
  0.955
OBART03G05930.1
annotation not available (176 aa)
     
   
  0.887
OBART03G06110.1
annotation not available (163 aa)
     
        0.861
OBART06G05420.1
annotation not available (392 aa)
           
  0.691
OBART02G32470.1
annotation not available (88 aa)
           
  0.691
OBART02G28240.1
annotation not available (491 aa)
     
   
  0.690
OBART03G17610.1
Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (897 aa)
           
  0.687
OBART02G15060.1
annotation not available (372 aa)
           
  0.687
OBART01G11950.3
annotation not available (642 aa)
           
  0.687
OBART11G16520.3
annotation not available (615 aa)
           
  0.620
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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