STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN78358.1VCBS repeat-containing protein. (293 aa)    
Predicted Functional Partners:
SFO74781.1
Ca2+-binding protein, RTX toxin-related.
  
  
  0.690
SFN78417.1
ATP-binding cassette, subfamily C, LapB.
 
     0.611
SFO74800.1
Ca2+-binding protein, RTX toxin-related.
 
  
 0.562
SFN78387.1
ABC transporter.
 
     0.551
SFN78445.1
Membrane fusion protein, adhesin transport system.
 
     0.543
SFO55405.1
Hemolysin-type calcium-binding repeat-containing protein.
  
  
  0.493
SFO46316.1
Sortase A.
  
  
  0.461
SFO16512.1
Hemolysin-type calcium-binding repeat-containing protein.
  
  
  0.451
SFO82900.1
Hemolysin-type calcium-binding repeat-containing protein.
  
  
  0.441
SFO98323.1
Hemolysin-type calcium-binding repeat-containing protein.
  
  
  0.441
Your Current Organism:
Cohaesibacter marisflavi
NCBI taxonomy Id: 655353
Other names: C. marisflavi, CGMCC 1.9157, Cohaesibacter marisflavi Qu et al. 2011, Cohaesibacter sp. DQHS21, NCCB 100300, strain DQHS21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.