Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
ZPR_0235 | ZPR_1187 | hopJ type III effector protein. | 2OG-Fe(II) oxygenase. | 0.426 |
ZPR_1187 | ZPR_0235 | 2OG-Fe(II) oxygenase. | hopJ type III effector protein. | 0.426 |
ZPR_1187 | ZPR_1188 | 2OG-Fe(II) oxygenase. | Conserved hypothetical protein. | 0.792 |
ZPR_1187 | ZPR_1189 | 2OG-Fe(II) oxygenase. | Two-component system sensor histidine kinase/response regulator hybrid. | 0.532 |
ZPR_1187 | ZPR_4438 | 2OG-Fe(II) oxygenase. | Ketopantoate reductase PanE/ApbA; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. | 0.643 |
ZPR_1188 | ZPR_1187 | Conserved hypothetical protein. | 2OG-Fe(II) oxygenase. | 0.792 |
ZPR_1188 | ZPR_1189 | Conserved hypothetical protein. | Two-component system sensor histidine kinase/response regulator hybrid. | 0.527 |
ZPR_1189 | ZPR_1187 | Two-component system sensor histidine kinase/response regulator hybrid. | 2OG-Fe(II) oxygenase. | 0.532 |
ZPR_1189 | ZPR_1188 | Two-component system sensor histidine kinase/response regulator hybrid. | Conserved hypothetical protein. | 0.527 |
ZPR_4438 | ZPR_1187 | Ketopantoate reductase PanE/ApbA; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. | 2OG-Fe(II) oxygenase. | 0.643 |