STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_1301Uncharacterized protein. (311 aa)    
Predicted Functional Partners:
CMQ_788
Histone deacetylase rpd3.
    
 0.636
CMQ_8252
Histone deacetylase.
    
 0.636
CMQ_104
Cellular morphogenesis protein.
    
 0.549
CMQ_5533
E3 ubiquitin-protein ligase.
    
 0.549
CMQ_4606
Uncharacterized protein.
    
 0.549
CMQ_5649
Mads box transcription factor mcm1.
   
 
 0.506
CMQ_6935
Histone deacetylase.
    
  0.504
CMQ_4061
Histone deacetylase.
    
  0.504
CMQ_5316
Histone deacetylase superfamily.
    
  0.504
CMQ_704
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.503
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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