STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ13766.1PFAM: regulatory protein TetR; KEGG: hor:Hore_23280 transcriptional regulator, TetR family. (214 aa)    
Predicted Functional Partners:
ADQ13767.1
ABC transporter related protein; KEGG: hor:Hore_23250 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.760
ADQ13764.1
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ckr:CKR_2227 hypothetical protein.
 
     0.601
ADQ13768.1
PFAM: protein of unknown function DUF214; KEGG: hor:Hore_23240 ABC-type transport system, involved in lipoprotein release, permease component.
  
    0.556
ADQ13765.1
KEGG: llo:LLO_1829 hypothetical protein.
       0.532
ADQ13769.1
PFAM: protein of unknown function DUF214; KEGG: hor:Hore_23230 ABC-type transport system, involved in lipoprotein release, permease component.
  
    0.532
ADQ13770.1
KEGG: hor:Hore_23220 putative sigma E regulatory protein, MucB/RseB.
       0.497
ADQ13771.1
KEGG: hor:Hore_23210 hypothetical protein.
       0.484
Your Current Organism:
Halanaerobium hydrogeniformans
NCBI taxonomy Id: 656519
Other names: H. hydrogeniformans, Halanaerobium sapolanicus, strain SL-HP
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