STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP72887.1EcsC protein family protein. (261 aa)    
Predicted Functional Partners:
SEP72920.1
Predicted N-acetyltransferase YhbS.
       0.763
SEP72954.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
       0.605
SEQ40240.1
Glycosyl transferase family 2.
  
     0.598
SEP57972.1
Hypothetical protein.
  
     0.585
SEP55576.1
AsmA-like C-terminal region.
  
     0.581
SEQ39732.1
Hypothetical protein.
  
     0.570
SEQ83366.1
Hypothetical protein.
  
     0.554
SEQ00178.1
Hypothetical protein.
  
     0.509
SEQ44852.1
Hypothetical protein.
  
     0.495
SEQ28624.1
Hypothetical protein.
  
     0.487
Your Current Organism:
Litorimicrobium taeanense
NCBI taxonomy Id: 657014
Other names: DSM 22007, KACC 13706, L. taeanense, Litorimicrobium taeanense Jin et al. 2011, Phaeobacter sp. G4, strain G4
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