STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT13850Tudor domain-containing protein 12. (2026 aa)    
Predicted Functional Partners:
KP79_PYT20017
Splicing factor 3A subunit 1.
   
 0.949
KP79_PYT05295
PHD finger-like domain-containing protein 5A.
    
 0.937
KP79_PYT19526
Splicing factor 3B subunit 1.
   
 0.937
KP79_PYT07685
Splicing factor 3A subunit 3.
   
 0.931
KP79_PYT07483
U7 snRNA-associated Sm-like protein LSm10.
    
 0.921
KP79_PYT10415
Splicing factor 3B subunit 2.
   
 0.917
KP79_PYT10088
Small nuclear ribonucleoprotein Sm D2.
   
 0.915
KP79_PYT08087
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.914
KP79_PYT21135
Splicing factor 3B subunit 4.
    
 0.913
KP79_PYT13945
Splicing factor 3B subunit 3.
    
 0.904
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.