KP79_PYT08804 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT08804

COBW domain-containing protein 1. (360 aa)

Predicted Functional Partners:

KP79_PYT06460

0.802

KP79_PYT18602

0.738

KP79_PYT00299

0.697

KP79_PYT05870

0.696

KP79_PYT23376

0.695

KP79_PYT13570

0.636

KP79_PYT09716

0.586

KP79_PYT01330

0.569

KP79_PYT11808

0.566

KP79_PYT03862

0.559

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT00299	KP79_PYT06460	A0A210R136	A0A210R4V1	40S ribosomal protein S29.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.643
KP79_PYT00299	KP79_PYT08804	A0A210R136	A0A210PNU3	40S ribosomal protein S29.	COBW domain-containing protein 1.	0.697
KP79_PYT00299	KP79_PYT09716	A0A210R136	A0A210QCL0	40S ribosomal protein S29.	Bifunctional glutamate/proline--tRNA ligase.	0.811
KP79_PYT00299	KP79_PYT13570	A0A210R136	A0A210PT22	40S ribosomal protein S29.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.958
KP79_PYT01330	KP79_PYT08804	A0A210QF43	A0A210PNU3	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	COBW domain-containing protein 1.	0.569
KP79_PYT03862	KP79_PYT06460	A0A210Q6E1	A0A210R4V1	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.412
KP79_PYT03862	KP79_PYT08804	A0A210Q6E1	A0A210PNU3	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	COBW domain-containing protein 1.	0.559
KP79_PYT03862	KP79_PYT09716	A0A210Q6E1	A0A210QCL0	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Bifunctional glutamate/proline--tRNA ligase.	0.763
KP79_PYT03862	KP79_PYT13570	A0A210Q6E1	A0A210PT22	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.441
KP79_PYT03862	KP79_PYT18602	A0A210Q6E1	A0A210PYX3	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Cysteine--tRNA ligase, cytoplasmic.	0.762
KP79_PYT05870	KP79_PYT06460	A0A210QET3	A0A210R4V1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.634
KP79_PYT05870	KP79_PYT08804	A0A210QET3	A0A210PNU3	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	COBW domain-containing protein 1.	0.696
KP79_PYT05870	KP79_PYT09716	A0A210QET3	A0A210QCL0	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	Bifunctional glutamate/proline--tRNA ligase.	0.811
KP79_PYT05870	KP79_PYT13570	A0A210QET3	A0A210PT22	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.958
KP79_PYT06460	KP79_PYT00299	A0A210R4V1	A0A210R136	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	40S ribosomal protein S29.	0.643
KP79_PYT06460	KP79_PYT03862	A0A210R4V1	A0A210Q6E1	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.412
KP79_PYT06460	KP79_PYT05870	A0A210R4V1	A0A210QET3	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	0.634
KP79_PYT06460	KP79_PYT08804	A0A210R4V1	A0A210PNU3	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	COBW domain-containing protein 1.	0.802
KP79_PYT06460	KP79_PYT09716	A0A210R4V1	A0A210QCL0	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Bifunctional glutamate/proline--tRNA ligase.	0.782
KP79_PYT06460	KP79_PYT13570	A0A210R4V1	A0A210PT22	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.721