KP79_PYT13210 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT13210

Allene oxide synthase-lipoxygenase protein. (649 aa)

Predicted Functional Partners:

KP79_PYT04524

0.910

KP79_PYT03089

0.906

KP79_PYT12830

0.901

KP79_PYT01433

0.661

KP79_PYT20653

0.661

KP79_PYT04527

0.661

KP79_PYT06066

0.659

KP79_PYT06142

0.652

KP79_PYT06388

0.652

KP79_PYT08374

0.651

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT01433	KP79_PYT04524	A0A210QC59	A0A210QLW4	Phospholipase A2.	Prostaglandin G/H synthase 2.	0.799
KP79_PYT01433	KP79_PYT04527	A0A210QC59	A0A210QLW3	Phospholipase A2.	Phospholipase A2.	0.405
KP79_PYT01433	KP79_PYT12830	A0A210QC59	A0A210QG02	Phospholipase A2.	Cytochrome P450 2J6; Belongs to the cytochrome P450 family.	0.655
KP79_PYT01433	KP79_PYT13210	A0A210QC59	A0A210Q649	Phospholipase A2.	Allene oxide synthase-lipoxygenase protein.	0.661
KP79_PYT01433	KP79_PYT20653	A0A210QC59	A0A210QK02	Phospholipase A2.	Phospholipase A2.	0.433
KP79_PYT03089	KP79_PYT13210	A0A210PJC8	A0A210Q649	Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family.	Allene oxide synthase-lipoxygenase protein.	0.906
KP79_PYT04524	KP79_PYT01433	A0A210QLW4	A0A210QC59	Prostaglandin G/H synthase 2.	Phospholipase A2.	0.799
KP79_PYT04524	KP79_PYT04527	A0A210QLW4	A0A210QLW3	Prostaglandin G/H synthase 2.	Phospholipase A2.	0.794
KP79_PYT04524	KP79_PYT06066	A0A210QLW4	A0A210PLX1	Prostaglandin G/H synthase 2.	Group XIIB secretory phospholipase A2-like protein.	0.666
KP79_PYT04524	KP79_PYT12830	A0A210QLW4	A0A210QG02	Prostaglandin G/H synthase 2.	Cytochrome P450 2J6; Belongs to the cytochrome P450 family.	0.900
KP79_PYT04524	KP79_PYT13210	A0A210QLW4	A0A210Q649	Prostaglandin G/H synthase 2.	Allene oxide synthase-lipoxygenase protein.	0.910
KP79_PYT04524	KP79_PYT20653	A0A210QLW4	A0A210QK02	Prostaglandin G/H synthase 2.	Phospholipase A2.	0.788
KP79_PYT04527	KP79_PYT01433	A0A210QLW3	A0A210QC59	Phospholipase A2.	Phospholipase A2.	0.405
KP79_PYT04527	KP79_PYT04524	A0A210QLW3	A0A210QLW4	Phospholipase A2.	Prostaglandin G/H synthase 2.	0.794
KP79_PYT04527	KP79_PYT12830	A0A210QLW3	A0A210QG02	Phospholipase A2.	Cytochrome P450 2J6; Belongs to the cytochrome P450 family.	0.655
KP79_PYT04527	KP79_PYT13210	A0A210QLW3	A0A210Q649	Phospholipase A2.	Allene oxide synthase-lipoxygenase protein.	0.661
KP79_PYT04527	KP79_PYT20653	A0A210QLW3	A0A210QK02	Phospholipase A2.	Phospholipase A2.	0.438
KP79_PYT06066	KP79_PYT04524	A0A210PLX1	A0A210QLW4	Group XIIB secretory phospholipase A2-like protein.	Prostaglandin G/H synthase 2.	0.666
KP79_PYT06066	KP79_PYT12830	A0A210PLX1	A0A210QG02	Group XIIB secretory phospholipase A2-like protein.	Cytochrome P450 2J6; Belongs to the cytochrome P450 family.	0.650
KP79_PYT06066	KP79_PYT13210	A0A210PLX1	A0A210Q649	Group XIIB secretory phospholipase A2-like protein.	Allene oxide synthase-lipoxygenase protein.	0.659