STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT18269E3 ubiquitin-protein ligase RFWD3. (716 aa)    
Predicted Functional Partners:
KP79_PYT19695
Replication protein A 14 kDa subunit.
    
 
 0.942
KP79_PYT07884
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
   
 
 0.925
KP79_PYT06236
Meiosis-specific with OB domain-containing protein.
   
 
 0.705
KP79_PYT09109
Replication protein A 32 kDa subunit.
    
 
 0.703
KP79_PYT04688
UPF0361 protein C3orf37-like.
      
 0.556
KP79_PYT09538
Fanconi anemia group M protein.
      
 0.546
KP79_PYT14856
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
   
  
 0.537
KP79_PYT21862
DNA repair endonuclease XPF.
      
 0.535
KP79_PYT13915
WD repeat-containing protein 59.
      
 0.531
KP79_PYT05647
Mitotic spindle assembly checkpoint protein MAD1.
      
 0.523
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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