STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT18158Rho GTPase-activating protein 39. (1131 aa)    
Predicted Functional Partners:
KP79_PYT11479
Ras-like GTP-binding protein RHO.
    
 0.608
KP79_PYT10178
Alpha-actinin, sarcomeric.
    
 0.570
KP79_PYT20374
Importin-5.
    
 
 0.551
KP79_PYT22463
Roundabout-like 2.
    
 0.544
KP79_PYT21793
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.539
KP79_PYT19310
Sentrin-specific protease 1.
    
  0.527
KP79_PYT05887
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 0.516
KP79_PYT12919
Myotubularin-related protein 2.
    
  0.501
KP79_PYT15528
Lamin Dm0; Belongs to the intermediate filament family.
    
  0.447
KP79_PYT03604
70 kDa neurofilament protein; Belongs to the intermediate filament family.
    
  0.447
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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